AMBER Archive (2006)

Subject: AMBER: fixing residues

From: Prabhakar. G. (prabha.ganesan_at_gmail.com)
Date: Mon Jul 03 2006 - 07:16:46 CDT

Dear Amber community,

we are trying to do a md simulation of a particular loop of a protein,
The protein has a total of 398 residues and the loop regions include
residues 228-241.
is there any option in amber to fix or freeze the conformation of other
residues except that of loop
so that they do not move during the simulation.

prabhakar
National Inst of Virology
Pune
India

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