AMBER Archive (2006)

Subject: AMBER: problems with cpinutil.pl

From: Abhilash Mohan (mohan.25_at_osu.edu)
Date: Fri Jun 23 2006 - 12:00:36 CDT

Some help please would like to know if I am doing something wrong or is
it more of an amber installation problem.
I am trying to generate a cpin file using the command:
ambpdb -p prmtop < prmcrd | cpinutil.pl > cpin (this is using amber8.0)
but I get this error:
Can't find namelist start delimiter, aborting at
/usr/local/amber/amber8/exe/CPin.pm line 213
Use of uninitialized value in pattern match (m//) at
/usr/local/amber/amber8/exe/CPin.pm line 222.
Use of uninitialized value in numeric lt (<) at
/usr/local/amber/amber8/exe/CPin.pm line 225.
Use of uninitialized value in array dereference at
/usr/local/amber/amber8/exe/CPin.pm line 131.
Use of uninitialized value in numeric lt (<) at
/usr/local/amber/amber8/exe/cpinutil.pl line 68.
Use of uninitialized value in array dereference at
/usr/local/amber/amber8/exe/CPin.pm line 131.
Use of uninitialized value in numeric lt (<) at
/usr/local/amber/amber8/exe/CPin.pm line 57.
Use of uninitialized value in length at
/usr/local/amber/amber8/exe/CPin.pm line 512.
Use of uninitialized value in concatenation (.) or string at
/usr/local/amber/amber8/exe/CPin.pm line 518.
Can someone point me in the right direction.
Thanks,
Abhilash Mohan
Graduate Student,
Biophysics Program,
The Ohio State University.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu