AMBER Archive (2006)

Subject: AMBER: problems with cpinutil.pl

From: Abhilash Mohan (mohan.25_at_osu.edu)
Date: Wed Jun 21 2006 - 16:06:05 CDT

I am trying to generate a cpin file using the command:
ambpdb -p prmtop < prmcrd | cpinutil.pl > cpin (this is using amber8.0)
but I get this error:
Can't find namelist start delimiter, aborting at
/usr/local/amber/amber8/exe/CPin.pm line 213
Use of uninitialized value in pattern match (m//) at
/usr/local/amber/amber8/exe/CPin.pm line 222.
Use of uninitialized value in numeric lt (<) at
/usr/local/amber/amber8/exe/CPin.pm line 225.
Use of uninitialized value in array dereference at
/usr/local/amber/amber8/exe/CPin.pm line 131.
Use of uninitialized value in numeric lt (<) at
/usr/local/amber/amber8/exe/cpinutil.pl line 68.
Use of uninitialized value in array dereference at
/usr/local/amber/amber8/exe/CPin.pm line 131.
Use of uninitialized value in numeric lt (<) at
/usr/local/amber/amber8/exe/CPin.pm line 57.
Use of uninitialized value in length at
/usr/local/amber/amber8/exe/CPin.pm line 512.
Use of uninitialized value in concatenation (.) or string at
/usr/local/amber/amber8/exe/CPin.pm line 518.
Can someone point me in the right direction.
Thanks,
Abhilash Mohan
Graduate Student,
Biophysics Program,
The Ohio State University.
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