AMBER Archive (2006)

Subject: AMBER: MMTSB: phi-pdi-based clustering

From: sangeeta_at_bioinfo.ernet.in
Date: Wed Jun 21 2006 - 07:37:39 CDT

Dear Amber users,
Since MMTSB Tool Set is relevant to AMBER, I hope I am not wrongly placing
my question here.
I would appreciate any help on the value of the "mixing factor" to be used
in cluster.pl script, with the "mix" mode clustering of protein structures
i.e. based on phi-psi as well as cartesian RMSD values. In the online
documentation of the "cluster.pl" script, there is a description of how
the mixfactor is used in the calculations but nothing is mentioned about
the value of the factor.
Any hints?
Thanks in advance.
Sangeeta
Bioinformatics Centre
University of Pune
India
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu