AMBER Archive (2006)

Subject: AMBER: help with custom RNA molecule

From: sethl_at_gatech.edu
Date: Mon Jun 19 2006 - 13:55:59 CDT


Dear All,

Using LEaP... I am currently trying to create an RNA molecule with 2' to 5'
linkages. I started with standard residues and modified them. Then I created a
.pdb file using nucgen which I then modified by replacing the standard residues
with the new ones I had created.

I can view each residue individually using the edit command but when trying to
view the newly modified .pdb file... I get a bunch of garbeled lines. Any ideas
as to what mistakes I am making?

Thanks,
Seth Lilavivat
Georgia Institute of Technology
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