AMBER Archive (2006)

Subject: Re: AMBER: How to build N-terminal of alanine : NH2

From: FyD (fyd_at_u-picardie.fr)
Date: Thu Jun 08 2006 - 03:27:58 CDT

Quoting jitrayut jitonnom <jitrayut.018_at_gmail.com>:

> I want to build the N-terminal of ALA that was usually generated to NALA
> when do leap but acctually I want NH2- instead of NH3- . How to do this ?
> Please suggest me.

See R.E.DD.B. Then "List projects" Then "Molecule fragment"
Select the projects as examples:

 F-40 N-terminal neutral fragment of O-methyl-L-tyrosine
 F-39 N-terminal neutral fragment of O-methyl-L-tyrosine
 F-38 N-terminal neutral fragment of O-methyl-L-tyrosine
 F-37 N-terminal neutral fragment of O-methyl-L-tyrosine

Or

 F-18 N-terminal neutral fragment of alpha-aminoisobutyric acid
 F-17 N-terminal neutral fragment of alpha-aminoisobutyric acid
 F-16 N-terminal neutral fragment of alpha-aminoisobutyric acid
 F-15 N-terminal neutral fragment of alpha-aminoisobutyric acid

regards, Francois

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