AMBER Archive (2006)

Subject: AMBER: pmemd_parallel_ins_prob

From: pkmukher (
Date: Wed Jun 07 2006 - 16:00:20 CDT


   I am getting the following error message when installing
the pmemd module in the parallel implementation.It is said
that the autoconfiguration scripst might be causing these
problems.If that is the case could you suggest how i need to
modify my configuration file to get the desired results.The
terminal output is given below.I have also added the output
from the hinv command.

Thanking you in anticipation

uranium 7% ./configure sgi_mips f90 mpi
PMEMD Configurate successfully completed.
uranium 8% make install
        cd src; make install
        ../Compile OPT_HI -P gbl_constants.f90
cat gbl_constants.f90 | /lib/cpp -P -DMPI
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
it_intrinsics=ON _gbl_constants_.f90
        ../Compile OPT_HI -P gbl_datatypes.f90
cat gbl_datatypes.f90 | /lib/cpp -P -DMPI
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
it_intrinsics=ON _gbl_datatypes_.f90
        ../Compile OPT_HI -P file_io_dat.f90
cat file_io_dat.f90 | /lib/cpp -P -DMPI -DDIRFRC_VECT_OPT
-DSGIFFT > _file_io_dat_.
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
it_intrinsics=ON _file_io_dat_.f90
        touch use_gbl_datatypes.h
        ../Compile OPT_HI -P parallel_dat.f90
cat parallel_dat.f90 | /lib/cpp -P -DMPI -DDIRFRC_VECT_OPT
-DSGIFFT > _parallel_dat
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
it_intrinsics=ON _parallel_dat_.f90
        ../Compile OPT_MED -P file_io.f90
cat file_io.f90 | /lib/cpp -P -DMPI -DDIRFRC_VECT_OPT
-DSGIFFT > _file_io_.f90
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
it_intrinsics=ON _file_io_.f90
        touch use_file_io.h
        touch use_gbl_constants.h
        touch use_parallel_dat.h
        ../Compile OPT_HI -P mdin_ctrl_dat.f90
cat mdin_ctrl_dat.f90 | /lib/cpp -P -DMPI
-DDIRFRC_VECT_OPT -DSGIFFT > _mdin_ctrl_dat_.f90
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
        ../Compile OPT_HI -P axis_optimize_cit.f90
cat axis_optimize_cit.f90 | /lib/cpp -P -DMPI
-DDIRFRC_VECT_OPT -DSGIFFT > _axis_optimize_cit_.f90
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
        touch use_axis_optimize_cit.h
        touch use_mdin_ctrl_dat.h
        ../Compile OPT_HI -P mdin_ewald_dat.f90
cat mdin_ewald_dat.f90 | /lib/cpp -P -DMPI
-DDIRFRC_VECT_OPT -DSGIFFT > _mdin_ewald_dat_.f90
f90 -nocpp -r16000 -mips4 -n32 -c -O3 -old_rl
Signal: Bus error in Front End Parse/Semantic phase.
Error: Signal Bus error in phase Front End Parse/Semantic --
processing aborted
f90 ERROR: /usr/lib32/cmplrs/mfef90 died due to signal 4
f90 ERROR: core dumped
*** Error code 1 (bu21)
*** Error code 1 (bu21)

uranium 1% hinv
8 700 MHZ IP35 Processors
CPU: MIPS R16000 Processor Chip Revision: 2.1
FPU: MIPS R16010 Floating Point Chip Revision: 2.1
Main memory size: 2048 Mbytes
Instruction cache size: 32 Kbytes
Data cache size: 32 Kbytes
Secondary unified instruction/data cache size: 4 Mbytes
Integral SCSI controller 2: Version IDE (ATA/ATAPI) IOC4
Integral SCSI controller 0: Version QL12160, low voltage
  Disk drive: unit 1 on SCSI controller 0
  Disk drive: unit 2 on SCSI controller 0
Integral SCSI controller 1: Version QL12160, single ended
  Disk drive: unit 1 on SCSI controller 1
  Disk drive: unit 2 on SCSI controller 1
  Disk drive: unit 3 on SCSI controller 1
  Disk drive: unit 5 on SCSI controller 1
  CDROM: unit 6 on SCSI controller 1
IOC3/IOC4 serial port: tty3
IOC3/IOC4 serial port: tty4
IOC3/IOC4 serial port: tty5
IOC3/IOC4 serial port: tty6
Gigabit Ethernet: tg0, module 001c01, PCI bus 1 slot 4
IOC3/IOC4 external interrupts: 1

Prasenjit Kumar Mukherjee
Graduate Student
Department of Medicinal Chemistry
School of Pharmacy
University of Mississippi

Cell - 662 380 0146
Office - 662 915 1286

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