AMBER Archive (2006)

Subject: AMBER: Amber: Segfault while running sander

Date: Mon Jun 05 2006 - 13:19:33 CDT

Dear All,

When running sander in as outlined in the DNA tutorial, I experience a segmentation fault. I could not find a solution in the archives and welcomeany suggestions. My commands are as follows:

sander -O - i -o polyAT_vac_init_min.out -c polyAT_vac.inpcrd -p polyAT_vac.prmtop -r polyAT_vac_init_min.rst

I created the input file according to the tutorial which looks like this:

polyA-polyT 10-mer: initial minimisation prior to MD &cntrl imin = 1, maxcyc = 500, ncyc = 250, ntb = 0, igb = 0, cut = 12 /

Thank you for your time and help.

Seth Lilavivat Georgia Insititute of Technology ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to