AMBER Archive (2006)

Subject: AMBER: antechamber help needed for FAD

From: pkb bioinfo (pkstruct_at_gmail.com)
Date: Mon May 29 2006 - 04:38:48 CDT

Dear Amber users

I am trying to do molecular dynamic calculation of a FAD containing protein.
I tried to prepare Leap input file of FAD through antechamber but it gave
the error message of
unrecognised atom.According to a previous post I also changed AP to PA ;AO1
to O1A and subsequently
but the same error message is there.So please guide me to prepare the
.prepin file of FAD.
Thank you in advance.

Regards
Prasanna Pradhan
MSU baroda

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