AMBER Archive (2006)

Subject: RE: AMBER: alpha helix preference problem

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Fri May 26 2006 - 10:23:27 CDT

Hi Harianto,

> > source leaprc.ff99
> > loadamberparams frcmod.mod_phipsi.1
> In Amber9
> > source learpc.ff99sb
> Look at
> http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_
> eight/section2.htm

My apologies but it turns out that this is not true. FF99SB is different to
mod_phipsi.1. I will correct the tutorial to make this clear. This is
perhaps an important lesson in why we need clear and concise naming for
force field variations.

All the best
Ross

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|\oss Walker

| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
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