AMBER Archive (2006)

Subject: AMBER: Saving RMSD values in VMD

From: nag raj (
Date: Fri May 26 2006 - 09:33:00 CDT

Dear Amber users,
            I loaded ligand pdb files (same ligand in
different conformations) in VMD and calculated RMSD by
taking one ligand as reference. Here my question is
how to save RMSD values in a file, i have more than
two hundred molecules, to note down all values
manually is labourious process. Could any body help me
            Thanks in advance.

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