AMBER Archive (2006)

Subject: Re: AMBER: Question about .off file

From: Ilyas Yildirim (yildirim_at_pas.rochester.edu)
Date: Fri May 26 2006 - 03:58:19 CDT

> !entry.ETOHBOX.unit.connect array int
> 0
> 2301 - values in my .off file

I think this should be

!entry.ETOHBOX.unit.connect array int
 0
 0

This part is giving info on the joint parts of the residues. In your case,
you dont have any such joint regions. In the nucleic acid .off files,
depending on the name of the residue (RX, RX3, RX5), u will have non-zero
values, which defines the joint atoms.

Good luck... 

-- 
  Ilyas Yildirim
  ---------------------------------------------------------------
  - Department of Chemisty       -				-
  - University of Rochester      -				-
  - Hutchison Hall, # B10        -				-
  - Rochester, NY 14627-0216     - Ph.:(585) 275 67 66 (Office)	-
  - http://www.pas.rochester.edu/~yildirim/			-
  ---------------------------------------------------------------

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu