AMBER Archive (2006)

Subject: AMBER: problem with prepfile

From: Shafinaz (
Date: Wed May 24 2006 - 14:50:21 CDT

Dear AMBER users

I have a problem during the generation of the prepfile of the molecule I
would like to use. It is a steroid linked with a peptide.I tried many ways
but could not solve that problem. I enclosed mol2 file of the molecule and
prep file I got from ANTECHAMBER.

If anybody can help with this I will always appreciate that.

I am eagerly waiting for the reply.

With kind regards.

Shafinaz F. Chowdhury, PhD
Research Associate,
Computational Chemistry,
Biotechnology Research Institute,
National Research Council of Canada.
Tel: 514 496 6338
Fax: 514 496 5174

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to