AMBER Archive (2006)

Subject: AMBER: RE: PMEMD compilation problems

From: Simon Whitehead (SJW084_at_bham.ac.uk)
Date: Fri May 19 2006 - 10:37:46 CDT

Bob,
>
> i am trying to compile pmemd in amber 8 on a p4 linux cluster with mpich =
> 1.2.6. I have tried the tarballed files but even though it gets further =
> it ends with the following error;
>
> parallel_dat.o(.text+0x14c): In function =
> `parallel_dat_module_mp_cit_mpi_allgathervec_':
> : undefined reference to `mpi_allgatherv_'
> parallel_dat.o(.text+0x3e4): In function =
> `parallel_dat_module_mp_wrapped_cit_mpi_allgathervec_':
> : undefined reference to `mpi_allgatherv_'
> parallel_dat.o(.text+0x666): In function =
> `parallel_dat_module_mp_cit_mpi_gathervec_':
> : undefined reference to `mpi_gatherv_'
> parallel_dat.o(.text+0x90f): In function =
> `parallel_dat_module_mp_wrapped_cit_mpi_gathervec_':
> : undefined reference to `mpi_gatherv_'
> mdin_ctrl_dat.o(.text+0x58a1): In function =
> `mdin_ctrl_dat_module_mp_bcast_mdin_ctrl_dat_':
> : undefined reference to `mpi_bcast_`

etc etc followd by;

> make[1]: *** [pmemd] Error 1
> make[1]: Leaving directory =
> `/home/filer2/bcm/sjw084/amber8_MPI/amber8/src/pmemd/src'
> make: *** [install] Error 2
>
> I also noticed a warning appearing several times during compilation, i
> have listed an example of the error below;
>
> fortcom: Warning: _alltasks_setup_.f90, line 1: Global name too long, =
> shortened from: =
> alltasks_setup_module_mp_parallel_environment_startup_$BLK.parallel_dat_m=
> odule_mp_mpi_status_ignore_ to: =
> asks_setup_module_mp_parallel_environment_startup_$BLK.parallel_dat_modul=
> e_mp_mpi_status_ignore_
>
> Could this be something to do with it?
>
> Regards
>
> simon
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