AMBER Archive (2006)

Subject: AMBER: OT: software to support AMBER?

From: Steve Gwaltney (
Date: Thu May 18 2006 - 13:37:06 CDT

I realize that this is a little off topic. However, I expect that will
be of general interest to many AMBER users. Also, I have searched the
archives without finding any good answers.

What software packages to people use to support using AMBER? VMD and
MMTSB are two obvious choices, but what else do you find helpful, either
to set up or to interpret MD simulations?

For background I was recently informed that we have some money left over
from a grant to spend on software. Since this is a biomedical computing
grant and since we use AMBER for our protein simulations, I would like
to spend the money to most efficiently aid our simulation efforts.

Steve Gwaltney

Dr. Steven Gwaltney                  Phone: 662-325-7602
Assistant Professor                    Fax: 662-325-1618
Department of Chemistry,              Mail: Box 9573
Center for Environmental Health Sciences,   Mississippi State University
and Center for Computational Sciences       Mississippi State, MS  39762

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