AMBER Archive (2006)

Subject: Re: AMBER: bond information in amber

From: Navnit Kumar Mishra (navnit_at_chemi.muni.cz)
Date: Thu May 11 2006 - 12:25:10 CDT

snoze pa wrote:

> Hi all,
> I am wondering about the bond information in amber. Shall I use
> residue name or the atom name of the residues.
> For example if I have a SSBOND in cys then what shall I use eg bond
> 1ARN.285.SG <http://1ARN.285.SG> or 1ARN.285.CYS
> thanks a lot for your help
> snoze

hello Snoze;

The first option is correct, you can also try to use 'desc' to see your
atomtypes in leap.

I think it will help you.

with regards,
Navnit
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