AMBER Archive (2006)

Subject: Re: AMBER: Amber9 test error on SGI Altix

From: Robert Duke (rduke_at_email.unc.edu)
Date: Tue May 09 2006 - 11:06:19 CDT

Is perhaps your AMBERHOME value wrong? Note the different partial paths
/software/amber9, /software/amebr9.
Regards - Bob Duke

----- Original Message -----
From: "Priti Hansia" <priti_at_mbu.iisc.ernet.in>
To: <amber_at_scripps.edu>
Sent: Tuesday, May 09, 2006 11:18 AM
Subject: AMBER: Amber9 test error on SGI Altix

>
> Dear Amber users,
>
> I have successfully installed AMBER 9 (both serial and parallel) on
> SGI-Altix. While test.serial worked fine, test.parallel gave the following
> error :
>
> [root_at_genomics test]# make test.parallel
> export TESTsander=/software/amebr9/exe/sander.MPI; make test.sander.BASIC
> make[1]: Entering directory `/software/amber9/test'
> cd dmp; ./Run.dmp
> /software/amebr9/exe/sander.MPI: Command not found.
> ./Run.dmp: Program error
> make[1]: *** [test.sander.BASIC] Error 1
> make[1]: Leaving directory `/software/amber9/test'
> make: *** [test.sander.BASIC.MPI] Error 2
>
> I have checked that 'sander.MPI' IS there in /software/amber9/exe path.
> But I dont know why is says '/software/amebr9/exe/sander.MPI: Command not
> found' !
>
> Can anyone suggest what is happening and how to take care of it ?
>
> Thanks,
>
> -Priti
>
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