AMBER Archive (2006)

Subject: RE: AMBER: Problem with shared libraries: libimf.so

From: Priti Hansia (priti_at_mbu.iisc.ernet.in)
Date: Sat May 06 2006 - 02:01:51 CDT

Applying bugfixes has worked.

I am now trying to install Amber9 in our SGI-Altix cluster. Before
starting the parallel installation I tried installing the serial one with
g95 compiler. But I am getting the follwing error:

[root_at_genomics src]# make serial
Starting installation of Amber9 (serial) at Fri May 5 11:31:18 IST 2006.
cd lib; make install
make[1]: Entering directory `/software/amber9/src/lib'
cpp -traditional -P -xassembler-with-cpp -DMKL new2oldparm.f >
_new2oldparm.f
g95 -c -O0 -fno-second-underscore -o new2oldparm.o _new2oldparm.f
as: unrecognized option `-Qy'
make[1]: *** [new2oldparm.o] Error 1
make[1]: Leaving directory `/software/amber9/src/lib'
make: *** [serial] Error 2

I am attching the config.h file also.

-Priti

> You need to apply the bugfixes to the source before you compile.
>
> Go to: http://amber.scripps.edu/bugfixes80.html
>
> Download bugfix.all. Then cd $AMBERHOME/src/
>
> make clean
> patch -p0 -N -r patch_rejects <bugfix.all
> make
> cd ../test
> make clean
> make
>
> There were a number of bugs in the amber 8 QMMM implementation that can
cause segfaults on various machines. The bugfixes should fix the
problem.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may
not
> be read every day, and should not be used for urgent or sensitive
issues.


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