AMBER Archive (2006)

Subject: RE: AMBER: Problem with shared libraries: libimf.so

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Fri May 05 2006 - 13:04:10 CDT

Dear Priti,

Check where libimf.so is on your system:

locate libimf.so

This should be in the lib directory where the intel compiler is installed.
You can then either make sure this directory is in your path by manually
adding it or make sure that you source the Intel setup script in your
.bashrc or .cshrc as specified in the ifort manual. E.g.:

source /opt/intel/fce/9.0/bin/ifortvars.sh

If the problem still happens after this then it is likely to be some
incompatibility between the operating system and the intel compilers. I
would contact Intel support about the issue.

Another option you could try is to compile AMBER statically:

cd $AMBERHOME/src
./configure -p4 -static ifort
make clean
make

This should make the problem go away...

All the best
Ross

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|\oss Walker

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> -----Original Message-----
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of Priti Hansia
> Sent: Friday, May 05, 2006 10:56
> To: amber_at_scripps.edu
> Subject: AMBER: Problem with shared libraries: libimf.so
>
>
> Dear users,
>
> I recently upgraded my OS from mandrake 10.0 to mandriva. I
> had installed
> amber8 in mandrake. After installation of mandriva, I started
> getting the
> following error when I tried executing sander:
>
> /soft/amber8/exe/sander: error while loading shared
> libraries: libimf.so:
> cannot open shared object file: No such file or directory
>
> So, I reinstalled amber8 after downloading and intalling ifort and mkl
> from intel site. The installation was successful but when I
> tried to run
> 'make test' I got the similar error:
>
> [root_at_megh test]# make test
> cd dmp; ./Run.dmp
> ../../exe/sander: error while loading shared libraries:
> libimf.so: cannot
> open shared object file: No such file or directory
> ./Run.dmp: Program error
> make: *** [test.sander.no_lmod] Error 1
>
> Can somebody please let me know whats going wrong here ? How can I fix
> "shared libraries:libimf.so" problem ?
>
> Thanks,
> -Priti
>
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