AMBER Archive (2006)

Subject: Re: AMBER: Shared libraries error

From: Viktor Hornak (hornak_at_csb.sunysb.edu)
Date: Thu May 04 2006 - 13:54:26 CDT

Andrew Box wrote:

> Dear Amber Users.
>
> I have installed Amber 8 in Fedora Core 4 on an intel PC with the
> intel Fortran compiler, version 9.0. The instillation seems to go
> fine, until I try to invoke sander, when i get the following error:
>
> # sander
> sander: error while loading shared libraries: libimf.so: cannot open
> shared object file: No such file or directory

If you already used "-static" flag when running configure script (you
didn't say how you configured amber), you might want to try replacing
all occurrences of "-static" with "-i-static" in the created "config.h"
file. Then recompile sander and see if it stops asking for that library.
I think static compilation flags changed sligthly between version 8 and
version 9 of Intel Fortran compilers.

Cheers,
-Viktor

>
> When I test sander, i got the following error:
>
> # make test.sander
> cd dmp; ./Run.dmp
> ../../exe/sander: error while loading shared libraries: libimf.so:
> cannot open shared object file: No such file or directory
> ./Run.dmp: Program error
> make: *** [test.sander.no_lmod] Error 1
>
> I have added the Amber path to my .bashrc file and also added in the
> LD_LIBRARY_PATH for the compiler.
>
> Any help your be greatly appreciated.
>
> Andrew Box
>
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-- 
======================
Viktor Hornak
SUNY at Stony Brook   
======================

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