AMBER Archive (2006)

Subject: AMBER: amber9 serial compilation error

From: Arvind Marathe (arvind_at_mbu.iisc.ernet.in)
Date: Thu May 04 2006 - 11:55:39 CDT


Hi all,
I have been trying to compile amber9 on SGI_ALTIX (64 bit, compiler ifort,
SCS library)

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altix amber9/src> ./configure ifort_ia64
AMBERHOME is set to /altix_home/scratch/mbumravi/amber9
Setting up Amber configuration file for architecture: ifort_ia64
Using parallel communications library: none
Using LAPACK and BLAS from SCSL.

The configuration file, config.h, was successfully created.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

'make serial' gives the following error after a while. I have also
attached config.h. It seems to be a library linking error. Could someone
please point the way out?

Thanks a lot.
Regards,
Arvind.

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ifort -o new2oldparm new2oldparm.o nxtsec.o
/opt/intel_80/fortran//lib/libifcoremt.a(tbk_linux.o)(.text+0xe2): In
function `tbk_stack_trace':
: warning: Using 'dlopen' in statically linked applications requires at
runtime the shared libraries from the glibc version used for linking
/usr/lib/libdl.a(dlsym.o)(.text+0x10): In function `dlsym':
/usr/src/packages/BUILD/glibc-2.3/dlfcn/dlsym.c:47: undefined reference to
`_dl_load_lock'
/usr/lib/libdl.a(dlsym.o)(.text+0x21):/usr/src/packages/BUILD/glibc-2.3/dlfcn/dlsym.c:47:
undefined reference to `_dl_load_lock'
/usr/lib/libdl.a(dlsym.o)(.text+0xb1):/usr/src/packages/BUILD/glibc-2.3/dlfcn/dlsym.c:58:
undefined reference to `_dl_load_lock'
/usr/lib/libdl.a(dlsym.o)(.text+0xc0):/usr/src/packages/BUILD/glibc-2.3/dlfcn/dlsym.c:58:
undefined reference to `_dl_load_lock'
/usr/lib/libdl.a(dlerror.o)(.text+0x3e2): In function `_dlerror_run':
/usr/src/packages/BUILD/glibc-2.3/dlfcn/dlerror.c:106: undefined reference
to `_dl_catch_error'
make[1]: *** [new2oldparm] Error 1
make[1]: Leaving directory `/altix_home/scratch/mbumravi/amber9/src/lib'
make: *** [serial] Error 2

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