AMBER Archive (2006)

Subject: AMBER: How does amber calculate HB?

From: Li Su (
Date: Mon May 01 2006 - 20:01:05 CDT

 Sorry to bother. I am curious that how amber8 is treating Hydrogen Bond, it
seems to me it's buried in the forceconstand and partial charges instead of
being a seperate term now. If so, how could it be reweighted in the namelist
&wt choosing HB, in other words , what energy terms are being weighted.
Thank you in advance.

Best Regards,
Li Su

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to