AMBER Archive (2006)

Subject: AMBER: amber9 compilation error on SGI altix

From: Lihua Wang (lhw_at_broyde.nyu.edu)
Date: Sat Apr 22 2006 - 12:58:26 CDT

Hi Amber authors,

we are trying to compile amber9 on our SGI altix and origin350 machines.

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for the altix platform, we used the following ENV variables:

setenv MKL_HOME /opt/intel/mkl/8.1
source /opt/intel_cc_80/bin/iccvars.csh
source /opt/intel_fc_80/bin/ifortvars.csh
source /opt/intel_idb_80/bin/idbvars.csh
setenv LD_LIBRARY_PATH
/opt/intel/mkl/8.1/lib/64:/opt/intel_cc_80/lib:/opt/intel_fc_80/lib

after applying the bugfix.all, we ran

./configure sgi_altix
make serial

The compilation was aborted when it reached nucgen part:

ifort -o nucgen nucgen.o ngfil.o ../lib/amopen.o ../lib/mexit.o
../lib/nxtsec.o -lscs
icpc -c -o elsize.o elsize.cc

/usr/include/c++/3.2.3/limits(1894): error: expected a ")"
         { return __glibcpp_long_double_signaling_NaN; }
                  ^
compilation aborted for elsize.cc (code 2)
make[1]: *** [elsize.o] Error 2
make: *** [serial] Error 2

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For the origin platform, serial compilation was completed (with loads of
warnings, though). However when tried the set of basic tests (make
test.serial), we ran into the following errors:

cd pbsa_trx; ./Run.trxox.min
Segmentation fault (core dumped)
   ./Run.trxox.min: Program error
*** Error code 1 (bu21)
-----------------------------------------------------------------------

any help/advice would be appreciated.

thanks.

lihua wang

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