AMBER Archive (2006)

Subject: AMBER: timing estimates

From: Ed Pate (pate_at_math.wsu.edu)
Date: Wed Apr 19 2006 - 18:10:30 CDT

Dear Amber users:

This is a somewhat poorly posed question. Are there any timing
estimates available or rules of thumb for computational speed running an
amber molecular dynamics simulation with infinband interconnects as
opposed to ethernet? Does infiniband give significant speedup? The
application would be a large protein in a box of explicit water molecules.

Thanks for the help.

Ed Pate
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