AMBER Archive (2006)

Subject: RE: AMBER: RE: about the fix_numbering_pdb.csh in Amber Tutorial_eight

From: Ross Walker (
Date: Wed Apr 19 2006 - 10:16:51 CDT

Dear Shulin,
I have updated the script in the tutorial and removed the pushd line, I
don't even know why this was in there since it isn't used anywhere else in
the script. I must have had some plan in mind when writing it that I later
That said it is strange that it only works for you when this line is
removed, you must have an old version of csh installed that doesn't support
the pushd command or uses different syntax.
Anyway, it should work for everybody now.
Let me know if you have any more problems.
Good luck...

|\oss Walker

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From: [] On Behalf Of
Shulin Zhuang
Sent: Tuesday, April 18, 2006 22:58
Subject: Re: AMBER: RE: about the fix_numbering_pdb.csh in Amber

Dear Ross,
Great thanks for your help. I find the problem now.
 If I use the full script, it does not work, but when I delete the first
line "pushd PDBfit >& /dev/null", it then works well.
I use this script under C shell of linux cluster with the RedHat 8. I think
this problem may due to my linux cluster, because my account is set in bash
shell .
Best regards

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