AMBER Archive (2006)

Subject: Re: AMBER: saltcon with explicit water?

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Wed Apr 12 2006 - 18:26:05 CDT


> Is it okay to use the addIons command twice, once to neutralize the system
> and a second time to add a given concentration of salt?

Yes.

> I don't totally understand the syntax "addIons unit ion1 numIon1 [ion2
> numIon2]". Is "numIon" literally the number of ions of that type, or can I
> enter it in terms of concentration? My goal is to add 0.1 M KCl.

Number of ions I believe. Definitely not concentration.

Bill
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