AMBER Archive (2006)

Subject: AMBER: RMS

From: Wen Li (liw_at_wadsworth.org)
Date: Mon Apr 03 2006 - 16:03:29 CDT

I was hoping someone could help me on the following question:

I have one molecule (100 nts) in 100 conformaions so in 100 pdb files. How
can I find rmsd of nts 50-60 of each conformation relative to nts 50-60 in
reference conformation when every conformation is aligned to the reference
at nts 1-10.

Thanks,
Wen
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