AMBER Archive (2006)

Subject: Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations

From: Ilyas Yildirim (yildirim_at_pas.rochester.edu)
Date: Mon Mar 06 2006 - 17:42:29 CST

Dear Brian,

Which commands did u use in xleap, and what is the error message u are
getting?

On Mon, 6 Mar 2006, Brian Stupi wrote:

> Amber Community,
>
>
> I am trying to transfer my PDB file for an 8 base DNA
> Duplex and make the Amber *.prmtop and *.inpcrd files.
> I am getting the messages below.
>
>
>
> I have inserted a TER line to separate the strands.
> If you have any suggestions please let me know.
>
> The same errors occur when I try a single A and T with
> no backbone.
>
> If anyone has any comments or suggestions I would love
> to hear them. Thank you for your time and help in
> advance.
>
> Brian
>
> PS – Included is the PDB file I was using.
>
>
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-- 
  Ilyas Yildirim
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