AMBER Archive (2006)

Subject: Re: AMBER: install error

From: Mark Williamson (Mark.Williamson_at_imperial.ac.uk)
Date: Thu Mar 02 2006 - 05:13:40 CST


biolabadmin_at_ibt.lt wrote:
> hi again, thx for help , this one problem was solved, a lot of thest PASSED,
> but one of them got error:
>
> cd qmmm/divcon; ./Run.crambin
> diffing crambin.out.save with crambin.out
> PASSED
> ==============================================================
> cd qmmm/divcon; ./Run.crambin_md
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image PC Routine Line Source
> sander.QMMM 081E8665 Unknown Unknown Unknown
> sander.QMMM 0818D861 Unknown Unknown Unknown
> sander.QMMM 08167800 Unknown Unknown Unknown
> sander.QMMM 08167318 Unknown Unknown Unknown
> sander.QMMM 080B8504 Unknown Unknown Unknown
> sander.QMMM 080661EE Unknown Unknown Unknown
> sander.QMMM 0806267A Unknown Unknown Unknown
> sander.QMMM 08048209 Unknown Unknown Unknown
> sander.QMMM 081DD6CA Unknown Unknown Unknown
> sander.QMMM 08048131 Unknown Unknown Unknown
> ./Run.crambin_md: Program error
> make[1]: *** [test.sander.QMMM] Error 1
> make[1]: Leaving directory `/usr/local/install/amber/amber-8/test'
>
> maybe you can help with this one too?
> thx
>
> Rytis

Have you applied any bugfixes?

http://amber.ch.ic.ac.uk/bugfixes80.html

IIRC, #13 fixes this. I actually recommend obtaining the complete set of
bug fixes http://amber.ch.ic.ac.uk/bugfixes/8.0/bugfix.all and applying
them all, rebuilding and then retrying the testcases. Ensure that you do
a "make clean" after applying the patches and before rebuilding.

Let me know if this works.

regards,

Mark

http://dumb.ch.ic.ac.uk/~mjw99/

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