AMBER Archive (2006)

Subject: Re: AMBER: mm_pbsa problem in IBM-aix

From: Ray Luo (rluo_at_uci.edu)
Date: Sun Feb 19 2006 - 14:22:01 CST

The error message suggests that you don't have enough memory for pb for
your system. To confirm this, you can use a smaller SCALE, i.e. set
SCALE to 1 in your mm_pbsa.in to see whether the error message goes away.

Jiten wrote:

> Dear amber users,
>
> I face the similar problem as in the
>
> http://amber.ch.ic.ac.uk/archive/200501/0182.html
>
> maxcyc = 0, ncyc = 10, ntmin = 2
> dx0 = 0.01000, drms = 0.00010
> PB bomb in pb_init(): Allocation aborted 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> Has anyone solved this problem.
>
> Thanks in advance,
>
> Jiten 

-- 
====================================================
Ray Luo, Ph.D.
Department of Molecular Biology and Biochemistry
University of California, Irvine, CA 92697-3900
Office: (949)824-9528         Lab: (949)824-9562
Fax: (949)824-8551          e-mail: rluo_at_uci.edu
Home page: http://rayl0.bio.uci.edu/rayl/
====================================================

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