AMBER Archive (2006)

Subject: RE: AMBER: sander problem

From: Thomas E. Cheatham, III (cheatham_at_chpc.utah.edu)
Date: Thu Feb 16 2006 - 15:12:39 CST

> ~/amber8/polyAT_gb_md1_nocut$ process_mdout.perl
> ../polyAT_gb_md1_nocut.out
> -bash: process_mdout.perl: command not found

The perl referred to in that file (as specified by the #!/usr/bin/perl) is
probably pointing to the wrong place...

You can either change this to be (if perl is in your path)

  #!perl

or the correct path (for example)

  #!/usr/sbin/perl

or just type

  perl process_mdout.perl *.out
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