AMBER Archive (2006)

Subject: AMBER:

From: shuli kang (kangshuli_at_gmail.com)
Date: Mon Feb 13 2006 - 06:26:07 CST

Dear amber users,
I`m trying to evaluate the secondary structure change of a protein
during simulations as functions of time. The do_dssp programme in
GROMACS package could compute the secondary structure for each time
frame calling the dssp program.
However, this programme doesn't work with amber trajactory files.
Maybe some conversion required for this purpose. Could anybody give me
some suggestion?

Thanks in advance!

Shuli. 

--
Modern Virology Research Center
College of Life Sciences,
Wuhan University
Wuhan, P. R. China, 430072
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu