AMBER Archive (2006)

Subject: AMBER: soft-core potential in amber?

From: Lydia (
Date: Mon Feb 06 2006 - 18:13:14 CST

Dear all,

    We are interested in using the soft-core potential to calculate the free
energy difference between wild type and mutant prion protein. I have just
installed amber 8 and we may also have access to amber 7 at our
collaborator's cluster but we don't know how and in which version amber we
can use soft-core potential.
    Would anyone please tell me how I can obtain and use the soft-core
potential in amber? Any suggestion or information is welcome. Thank you for
your help in advance.


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to