AMBER Archive (2006)

Subject: AMBER: soft-core potential in amber?

From: Lydia (aether2006_at_gmail.com)
Date: Mon Feb 06 2006 - 18:13:14 CST


Dear all,

    We are interested in using the soft-core potential to calculate the free
energy difference between wild type and mutant prion protein. I have just
installed amber 8 and we may also have access to amber 7 at our
collaborator's cluster but we don't know how and in which version amber we
can use soft-core potential.
    Would anyone please tell me how I can obtain and use the soft-core
potential in amber? Any suggestion or information is welcome. Thank you for
your help in advance.

Sincerely
Lydia

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