AMBER Archive (2006)

Subject: AMBER: Gibbs PMF Calculation

From: Atsutoshi Okabe (
Date: Wed Feb 01 2006 - 06:31:12 CST



I'd like to use Gibbs to calculate free energy varing

 the distance between two molecules, for example two methanes in water.

In this case,do I need to set particular perturbed atoms or perturbed

And to execute saveamberparmpert command in tleap?

Could you give me a suggestion?

Thank you.


Atsutoshi Okabe






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