AMBER Archive (2006)

Subject: Re: AMBER: Problem in compiling sander with MMTSB

From: Scott Brozell (sbrozell_at_scripps.edu)
Date: Mon Jan 30 2006 - 21:44:06 CST

Hi,

On Tue, 31 Jan 2006 luckyang_at_gmail.com wrote:

> Dear AMBER users,
>
> I am trying to compile sander with support for MMTSB and I get the following
> message:
>
> /usr/bin/ld: Warning: alignment 32 of symbol `_D_in_DECOMP' in decomp.o is
> smaller than 64 in runmd.o
> mmtsb.o(.text+0x1284): In function `MMTSB_NEWLAMBDA':
> : undefined reference to `NEWTEMP'
> mmtsb.o(.text+0x12de): In function `MMTSB_NEWLAMBDA':
> : undefined reference to `GETBIAS'
> mmtsb.o(.text+0x1390): In function `MMTSB_NEWTEMP':
> : undefined reference to `NEWTEMP'
> collect2: ld returned 1 exit status
> link failed.
> make: *** [sander] Error 1

Did you re-configure to request mmtsb ?

cd $AMBERHOME/src
./configure -mmtsb yada yada yada
cd sander
make ...

Scott

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu