AMBER Archive (2006)

Subject: AMBER: is there any relationship between RMSD and B-factor?

From: haixiao jin (jinhx952_at_gmail.com)
Date: Wed Jan 18 2006 - 21:30:33 CST

Dear Amber users,

     Two MD simulation were performed for a complex to test the importance
of a key conserved residues. there is the result of RMSD and B-factor I
obtained. The RMSD of simulation A is lower than that of simulation B, while
the B-factor of simultiaon A is larger than that of simulation B. is it
reasonable? Is there any relationship between RMSD and B-factor? Thank you
in advance!


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