AMBER Archive (2006)

Subject: AMBER: Amber 8 install problem

From: Andrew Box (box_twin3_at_hotmail.com)
Date: Tue Jan 17 2006 - 22:50:21 CST

Hi

I am trying to intall Amber 8.0 on a AMD x2 4200 computer running Fedora
Core 4 in 64 Bit. i have installed the intel fortran complilers 8.1 and 9.0
( l_fce_pc_8.1.033 and l_fc_c_9.0.031 ). The current version installed is
8.1.

When i run the make serial command i get the following:

[root_at_andrepc src]# ./configure ifort
AMBERHOME is set to /usr/local/amber8
Setting up Amber configuration file for architecture: ifort
Using parallel communications library: none
The MKL_HOME environment variable is not defined.
    The MKL is recommended for optimal performance.

The configuration file, config.h, was successfully created.

[root_at_andrepc src]# make serial
Starting installation of Amber8 (serial) at Wed Jan 18 15:21:06 EST 2006.
mkdir ../exe
mkdir: cannot create directory `../exe': File exists
make: [serial] Error 1 (ignored)
cd lib; make install
make[1]: Entering directory `/usr/local/amber8/src/lib'
cpp -traditional -P -I/usr/local/amber8/src/include new2oldparm.f >
_new2oldpar m.f
ifort -c -w95 -mp1 -O0 -o new2oldparm.o _new2oldparm.f
cpp -traditional -P -I/usr/local/amber8/src/include nxtsec.f > _nxtsec.f
ifort -c -w95 -mp1 -O0 -o nxtsec.o _nxtsec.f
ifort -o new2oldparm new2oldparm.o nxtsec.o
ld: skipping incompatible
/usr/lib/gcc/x86_64-redhat-linux/4.0.0/../../..//libm. so when searching for
-lm
ld: skipping incompatible
/usr/lib/gcc/x86_64-redhat-linux/4.0.0/../../..//libm. a when searching for
-lm
ld: skipping incompatible
/usr/lib/gcc/x86_64-redhat-linux/4.0.0/../../..//libc. so when searching for
-lc
ld: skipping incompatible
/usr/lib/gcc/x86_64-redhat-linux/4.0.0/../../..//libc. a when searching for
-lc
ld: skipping incompatible /usr/lib/libc.so when searching for -lc
ld: skipping incompatible /usr/lib/libc.a when searching for -lc
ld: cannot find -lc
make[1]: *** [new2oldparm] Error 1
make[1]: Leaving directory `/usr/local/amber8/src/lib'
make: *** [serial] Error 2

I am unable to work out what -lm and -lc is and where it is missing from.
Does anyone know what they are and how to solve this problem?

I am running Fedora Core 4 (kernel 2.6.11). The cpu is an AMD X2 4200 with
2x 512 MB RAM. Am using the l_fce_pc_8.1.033 compiler (intel fortran V 8.1).
I am not running a Maths Kernel Libary.

Thanks for any help.

Andrew Box
La Trobe University

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