AMBER Archive (2006)

Subject: AMBER: How to use PTRAJ to analyze the CA RMS diveations as a function of residue number?

From: tonglei (xbcdnana_at_gmail.com)
Date: Sun Jan 08 2006 - 20:36:30 CST

Hi:

 I want to identify the parts of the protein that underwent large
conformational changes.

How to use PTRAJ to analyze the CA RMS diveations as a function of residue
number? How to prepare the input files?

 Thanks in advance

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