AMBER Archive (2006)

Subject: AMBER: Where to modify the atom type in sander?

From: zhli_2000_at_126.com
Date: Thu Jan 05 2006 - 03:21:20 CST

Dear all,

     When I use mm_pbsa to calculate DC, the error is the following:
---------------
$ bad atom type: F
        /data/amber8/exe/sander -O -i sander_com.in -o sander_com.1.out -c
./min_cyc16_com.crd.1 -p ./mincomplex.top not successful

---------------
 There exits F atom in my ligand file. The above question seems that sander
is something wrong.

  How to modify this? Please give me some advices.

  Thank you in advance!

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