Starting installation of Amber8 (serial) at Mon Mar 21 17:45:57 EST 2005. mkdir ../exe mkdir: cannot create directory `../exe': File exists make: [serial] Error 1 (ignored) cd lib; make install make[1]: Entering directory `/usr/local/amber8/src/lib' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL new2oldparm.f > _new2oldparm.f ifort -c -w95 -ftz -O2 -o new2oldparm.o _new2oldparm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nxtsec.f > _nxtsec.f ifort -c -w95 -ftz -O2 -o nxtsec.o _nxtsec.f ifort -o new2oldparm new2oldparm.o nxtsec.o mv new2oldparm ../../exe /bin/rm _*.f make[1]: Leaving directory `/usr/local/amber8/src/lib' cd addles; make install make[1]: Entering directory `/usr/local/amber8/src/addles' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL lesmain.f > _lesmain.f ifort -c -w95 -ftz -O2 -o lesmain.o _lesmain.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL addspace.f > _addspace.f ifort -c -w95 -ftz -O2 -o addspace.o _addspace.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL readprm.f > _readprm.f ifort -c -w95 -ftz -O2 -o readprm.o _readprm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL writprm.f > _writprm.f ifort -c -w95 -ftz -O2 -o writprm.o _writprm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL readcrd.f > _readcrd.f ifort -c -w95 -ftz -O2 -o readcrd.o _readcrd.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL writcrd.f > _writcrd.f ifort -c -w95 -ftz -O2 -o writcrd.o _writcrd.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL pick.f > _pick.f ifort -c -w95 -ftz -O2 -o pick.o _pick.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL rline.f > _rline.f ifort -c -w95 -ftz -O2 -o rline.o _rline.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nxt.f > _nxt.f ifort -c -w95 -ftz -O2 -o nxt.o _nxt.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL intgr.f > _intgr.f ifort -c -w95 -ftz -O2 -o intgr.o _intgr.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL find.f > _find.f ifort -c -w95 -ftz -O2 -o find.o _find.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL of.f > _of.f ifort -c -w95 -ftz -O2 -o of.o _of.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL geti.f > _geti.f ifort -c -w95 -ftz -O2 -o geti.o _geti.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL unit.f > _unit.f ifort -c -w95 -ftz -O2 -o unit.o _unit.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL getc.f > _getc.f ifort -c -w95 -ftz -O2 -o getc.o _getc.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL alert.f > _alert.f ifort -c -w95 -ftz -O2 -o alert.o _alert.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL echo.f > _echo.f ifort -c -w95 -ftz -O2 -o echo.o _echo.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL get4c.f > _get4c.f ifort -c -w95 -ftz -O2 -o get4c.o _get4c.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL getd.f > _getd.f ifort -c -w95 -ftz -O2 -o getd.o _getd.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL wlesprm.f > _wlesprm.f ifort -c -w95 -ftz -O2 -o wlesprm.o _wlesprm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL lesprm.f > _lesprm.f ifort -c -w95 -ftz -O2 -o lesprm.o _lesprm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL les2prm.f > _les2prm.f ifort -c -w95 -ftz -O2 -o les2prm.o _les2prm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL checksz.f > _checksz.f ifort -c -w95 -ftz -O2 -o checksz.o _checksz.f cd ../lib; ./Makelist ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o make[2]: Entering directory `/usr/local/amber8/src/lib' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL random.f > _random.f ifort -c -w95 -ftz -O2 -o random.o _random.f make[2]: Leaving directory `/usr/local/amber8/src/lib' make[2]: Entering directory `/usr/local/amber8/src/lib' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mexit.f > _mexit.f ifort -c -w95 -ftz -O2 -o mexit.o _mexit.f make[2]: Leaving directory `/usr/local/amber8/src/lib' make[2]: Entering directory `/usr/local/amber8/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber8/src/lib' ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o geti.o unit.o getc.o alert.o echo.o get4c.o getd.o wlesprm.o lesprm.o les2prm.o checksz.o ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o /opt/intel/mkl72/lib/64/libmkl_lapack.a /opt/intel/mkl72/lib/64/libmkl_ipf.a -L/opt/intel/mkl72/lib/64 -lguide -lpthread -ldl ld: skipping incompatible /opt/intel/mkl72/lib/64/libguide.so when searching for -lguide ld: skipping incompatible /opt/intel/mkl72/lib/64/libguide.a when searching for -lguide mv addles ../../exe make[1]: Leaving directory `/usr/local/amber8/src/addles' cd sander; make serial make[1]: Entering directory `/usr/local/amber8/src/sander' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL trace.f > _trace.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o trace.o _trace.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL lmod.f > _lmod.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o lmod.o _lmod.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL decomp.f > _decomp.f ifort -c -w95 -ftz -O2 -FR -o decomp.o _decomp.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL icosasurf.f > _icosasurf.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o icosasurf.o _icosasurf.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL egb.f > _egb.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o egb.o _egb.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL findmask.f > _findmask.f ifort -c -w95 -ftz -O2 -FR -o findmask.o _findmask.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL pb_force.f > _pb_force.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o pb_force.o _pb_force.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL fastwt.f > _fastwt.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o fastwt.o _fastwt.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL sander.f > _sander.f ifort -c -w95 -ftz -O2 -FR -o sander.o _sander.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL cshf.f > _cshf.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o cshf.o _cshf.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL noecalc.f > _noecalc.f ifort -c -w95 -ftz -O2 -FR -o noecalc.o _noecalc.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL noeread.f > _noeread.f ifort -c -w95 -ftz -O2 -FR -o noeread.o _noeread.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL caldis.f > _caldis.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o caldis.o _caldis.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL calrate.f > _calrate.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o calrate.o _calrate.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL dinten.f > _dinten.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o dinten.o _dinten.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL drates.f > _drates.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o drates.o _drates.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL indexn.f > _indexn.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o indexn.o _indexn.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL kmat.f > _kmat.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o kmat.o _kmat.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL pearsn.f > _pearsn.f ifort -c -w95 -ftz -O2 -FR -o pearsn.o _pearsn.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL plane.f > _plane.f ifort -c -w95 -ftz -O2 -FR -o plane.o _plane.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL remarc.f > _remarc.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o remarc.o _remarc.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrcal.f > _nmrcal.f ifort -c -w95 -ftz -O2 -FR -o nmrcal.o _nmrcal.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrred.f > _nmrred.f ifort -c -w95 -ftz -O2 -FR -o nmrred.o _nmrred.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL restal.f > _restal.f ifort -c -w95 -ftz -O2 -FR -o restal.o _restal.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL getnat.f > _getnat.f ifort -c -w95 -ftz -O2 -FR -o getnat.o _getnat.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrnrg.f > _nmrnrg.f ifort -c -w95 -ftz -O2 -FR -o nmrnrg.o _nmrnrg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL modwt.f > _modwt.f ifort -c -w95 -ftz -O2 -FR -o modwt.o _modwt.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL disnrg.f > _disnrg.f ifort -c -w95 -ftz -O2 -FR -o disnrg.o _disnrg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL angnrg.f > _angnrg.f ifort -c -w95 -ftz -O2 -FR -o angnrg.o _angnrg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL tornrg.f > _tornrg.f ifort -c -w95 -ftz -O2 -FR -o tornrg.o _tornrg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrprt.f > _nmrprt.f ifort -c -w95 -ftz -O2 -FR -o nmrprt.o _nmrprt.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrgrp.f > _nmrgrp.f ifort -c -w95 -ftz -O2 -FR -o nmrgrp.o _nmrgrp.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrcms.f > _nmrcms.f ifort -c -w95 -ftz -O2 -FR -o nmrcms.o _nmrcms.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrcmf.f > _nmrcmf.f ifort -c -w95 -ftz -O2 -FR -o nmrcmf.o _nmrcmf.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL impnum.f > _impnum.f ifort -c -w95 -ftz -O2 -FR -o impnum.o _impnum.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrsht.f > _nmrsht.f ifort -c -w95 -ftz -O2 -FR -o nmrsht.o _nmrsht.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL at2res.f > _at2res.f ifort -c -w95 -ftz -O2 -FR -o at2res.o _at2res.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL chklin.f > _chklin.f ifort -c -w95 -ftz -O2 -FR -o chklin.o _chklin.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL opnmrg.f > _opnmrg.f ifort -c -w95 -ftz -O2 -FR -o opnmrg.o _opnmrg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL printe.f > _printe.f ifort -c -w95 -ftz -O2 -FR -o printe.o _printe.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL runmin.f > _runmin.f ifort -c -w95 -ftz -O2 -FR -o runmin.o _runmin.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ndvprt.f > _ndvprt.f ifort -c -w95 -ftz -O2 -FR -o ndvprt.o _ndvprt.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL force.f > _force.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o force.o _force.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL rdparm.f > _rdparm.f ifort -c -w95 -ftz -O2 -FR -o rdparm.o _rdparm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mdread.f > _mdread.f ifort -c -w95 -ftz -O2 -FR -o mdread.o _mdread.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL locmem.f > _locmem.f ifort -c -w95 -ftz -O2 -FR -o locmem.o _locmem.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL runmd.f > _runmd.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o runmd.o _runmd.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL getcor.f > _getcor.f ifort -c -w95 -ftz -O2 -FR -o getcor.o _getcor.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL r6ave.f > _r6ave.f ifort -c -w95 -ftz -O2 -FR -o r6ave.o _r6ave.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL r6drv.f > _r6drv.f ifort -c -w95 -ftz -O2 -FR -o r6drv.o _r6drv.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL aveint.f > _aveint.f ifort -c -w95 -ftz -O2 -FR -o aveint.o _aveint.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL degcnt.f > _degcnt.f ifort -c -w95 -ftz -O2 -FR -o degcnt.o _degcnt.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL corf.f > _corf.f ifort -c -w95 -ftz -O2 -FR -o corf.o _corf.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL threeb.f > _threeb.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o threeb.o _threeb.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL tripl.f > _tripl.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o tripl.o _tripl.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmrrad.f > _nmrrad.f ifort -c -w95 -ftz -O2 -FR -o nmrrad.o _nmrrad.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL decnvh.f > _decnvh.f ifort -c -w95 -ftz -O2 -FR -o decnvh.o _decnvh.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL echoin.f > _echoin.f ifort -c -w95 -ftz -O2 -FR -o echoin.o _echoin.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL parallel.f > _parallel.f ifort -c -w95 -ftz -O2 -FR -o parallel.o _parallel.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL jnrg.f > _jnrg.f ifort -c -w95 -ftz -O2 -FR -o jnrg.o _jnrg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL shake.f > _shake.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o shake.o _shake.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ene.f > _ene.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ene.o _ene.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mdwrit.f > _mdwrit.f ifort -c -w95 -ftz -O2 -FR -o mdwrit.o _mdwrit.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL minrit.f > _minrit.f ifort -c -w95 -ftz -O2 -FR -o minrit.o _minrit.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL set.f > _set.f ifort -c -w95 -ftz -O2 -FR -o set.o _set.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL setmm.f > _setmm.f ifort -c -w95 -ftz -O2 -FR -o setmm.o _setmm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL dynlib.f > _dynlib.f ifort -c -w95 -ftz -O2 -FR -o dynlib.o _dynlib.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mdfil.f > _mdfil.f ifort -c -w95 -ftz -O2 -FR -o mdfil.o _mdfil.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nmlsrc.f > _nmlsrc.f ifort -c -w95 -ftz -O2 -FR -o nmlsrc.o _nmlsrc.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_force.f > _ew_force.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_force.o _ew_force.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_setup.f > _ew_setup.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_setup.o _ew_setup.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_box.f > _ew_box.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_box.o _ew_box.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_bspline.f > _ew_bspline.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_bspline.o _ew_bspline.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_fft.f > _ew_fft.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_fft.o _ew_fft.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_direct.f > _ew_direct.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_direct.o _ew_direct.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_recip.f > _ew_recip.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_recip.o _ew_recip.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL pcshift.f > _pcshift.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o pcshift.o _pcshift.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL align.f > _align.f ifort -c -w95 -ftz -O2 -FR -o align.o _align.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL rstack.f > _rstack.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o rstack.o _rstack.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL istack.f > _istack.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o istack.o _istack.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL rfree.f > _rfree.f ifort -c -w95 -ftz -O2 -FR -o rfree.o _rfree.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL rgroup.f > _rgroup.f ifort -c -w95 -ftz -O2 -FR -o rgroup.o _rgroup.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL random.f > _random.f ifort -c -w95 -ftz -O2 -FR -o random.o _random.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL lsqfit.f > _lsqfit.f ifort -c -w95 -ftz -O2 -FR -o lsqfit.o _lsqfit.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL amopen.f > _amopen.f ifort -c -w95 -ftz -O2 -FR -o amopen.o _amopen.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL debug.f > _debug.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o debug.o _debug.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_recip_reg.f > _ew_recip_reg.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_recip_reg.o _ew_recip_reg.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_handle_dips.f > _ew_handle_dips.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_handle_dips.o _ew_handle_dips.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL ew_dipole_recip.f > _ew_dipole_recip.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o ew_dipole_recip.o _ew_dipole_recip.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mexit.f > _mexit.f ifort -c -w95 -ftz -O2 -FR -o mexit.o _mexit.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL new_time.f > _new_time.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o new_time.o _new_time.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL extra_pts.f > _extra_pts.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o extra_pts.o _extra_pts.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL thermo_int.f > _thermo_int.f ifort -c -w95 -ftz -O2 -FR -o thermo_int.o _thermo_int.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL matinv.f > _matinv.f ifort -c -w95 -ftz -O2 -FR -o matinv.o _matinv.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL assert.f > _assert.f ifort -c -w95 -ftz -O2 -FR -o assert.o _assert.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mmtsb.f > _mmtsb.f ifort -c -w95 -ftz -O2 -FR -o mmtsb.o _mmtsb.f gcc -c -O2 -o mmtsb_client.o mmtsb_client.c cpp -traditional -P -I/usr/local/amber8/src/include -DMKL erfcfun.f > _erfcfun.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o erfcfun.o _erfcfun.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL veclib.f > _veclib.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o veclib.o _veclib.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL mdm.f > _mdm.f ifort -c -w95 -ftz -O2 -FR -o mdm.o _mdm.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL pb_init.f > _pb_init.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o pb_init.o _pb_init.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL constantph.f > _constantph.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -FR -o constantph.o _constantph.f cpp -traditional -P -I/usr/local/amber8/src/include -DMKL prn_dipoles.f > _prn_dipoles.f ifort -c -w95 -ftz -O2 -FR -o prn_dipoles.o _prn_dipoles.f cd ../lib; make sys.a make[2]: Entering directory `/usr/local/amber8/src/lib' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL sys.f > _sys.f ifort -c -w95 -ftz -O2 -o sys.o _sys.f gcc -c -O2 -o wallclock.o wallclock.c ar rv sys.a sys.o wallclock.o a - sys.o a - wallclock.o ranlib sys.a make[2]: Leaving directory `/usr/local/amber8/src/lib' cd ../lib; make nxtsec.o make[2]: Entering directory `/usr/local/amber8/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber8/src/lib' cd ../lapack; make make[2]: Entering directory `/usr/local/amber8/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:81: warning: ignoring old commands for target `.f.o' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL xerbla.f > _xerbla.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -o xerbla.o _xerbla.f ar rv lapack.a xerbla.o a - xerbla.o ranlib lapack.a make[2]: Leaving directory `/usr/local/amber8/src/lapack' cd ../blas; make make[2]: Entering directory `/usr/local/amber8/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:81: warning: ignoring old commands for target `.f.o' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL dummy.f > _dummy.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -o dummy.o _dummy.f ar rv blas.a dummy.o a - dummy.o ranlib blas.a make[2]: Leaving directory `/usr/local/amber8/src/blas' cd ../lmod; make make[2]: Entering directory `/usr/local/amber8/src/lmod' cd xmin; make make[3]: Entering directory `/usr/local/amber8/src/lmod/xmin' Makefile:6: warning: overriding commands for target `.f.o' ../../config.h:81: warning: ignoring old commands for target `.f.o' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL xmin.f > _xmin.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -o xmin.o _xmin.f make[3]: Leaving directory `/usr/local/amber8/src/lmod/xmin' cd nvib; make make[3]: Entering directory `/usr/local/amber8/src/lmod/nvib' Makefile:6: warning: overriding commands for target `.f.o' ../../config.h:81: warning: ignoring old commands for target `.f.o' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL nvib.f > _nvib.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -o nvib.o _nvib.f make[3]: Leaving directory `/usr/local/amber8/src/lmod/nvib' cd lmod; make make[3]: Entering directory `/usr/local/amber8/src/lmod/lmod' Makefile:6: warning: overriding commands for target `.f.o' ../../config.h:81: warning: ignoring old commands for target `.f.o' cpp -traditional -P -I/usr/local/amber8/src/include -DMKL lmod.f > _lmod.f ifort -c -w95 -ftz -O3 -IPF_fma -ip -o lmod.o _lmod.f make[3]: Leaving directory `/usr/local/amber8/src/lmod/lmod' ar rv lmod.a xmin/*.o nvib/*.o lmod/*.o a - xmin/xmin.o a - nvib/nvib.o a - lmod/lmod.o ranlib lmod.a make[2]: Leaving directory `/usr/local/amber8/src/lmod' ifort -FR -o sander trace.o lmod.o decomp.o icosasurf.o egb.o findmask.o pb_force.o sander.o cshf.o noecalc.o noeread.o caldis.o calrate.o dinten.o drates.o indexn.o kmat.o pearsn.o plane.o remarc.o nmrcal.o nmrred.o restal.o getnat.o nmrnrg.o modwt.o disnrg.o angnrg.o tornrg.o nmrprt.o nmrgrp.o nmrcms.o nmrcmf.o impnum.o nmrsht.o at2res.o chklin.o opnmrg.o printe.o runmin.o ndvprt.o force.o rdparm.o mdread.o locmem.o runmd.o getcor.o r6ave.o r6drv.o aveint.o degcnt.o corf.o threeb.o tripl.o nmrrad.o decnvh.o fastwt.o echoin.o parallel.o jnrg.o shake.o ene.o mdwrit.o minrit.o set.o setmm.o dynlib.o mdfil.o nmlsrc.o ew_force.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o ew_direct.o ew_recip.o pcshift.o align.o rstack.o istack.o rfree.o rgroup.o random.o lsqfit.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o mdm.o pb_init.o constantph.o prn_dipoles.o \ ../lmod/lmod.a /opt/intel/mkl72/lib/64/libmkl_lapack.a /opt/intel/mkl72/lib/64/libmkl_ipf.a -L/opt/intel/mkl72/lib/64 -lguide -lpthread -ldl \ ../lapack/lapack.a ../blas/blas.a ../lib/nxtsec.o ../lib/sys.a /opt/intel/mkl72/lib/64/libmkl_lapack.a: could not read symbols: Bad value make[1]: *** [sander] Error 1 make[1]: Leaving directory `/usr/local/amber8/src/sander' make: *** [serial] Error 2