minimization of receptor + solvent 
 &cntrl
     timlim=3600000, imin=1, nmropt=1,

     ntpr=50, ibelly=1,

     ntf=1, ntb=2, dielc=1., cut=10.,
     scnb=2., scee=1.2, ntc=1,

     ntp=2, pres0=1., comp=44.6, taup=0.2, npscal=1,

     maxcyc=500, ncyc=200,

 &end

 &wt type='END',   &end

LISTIN = POUT
LISTOUT = POUT

 &rst     iat = 75, 3918,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 5.0, rk3 = 5.0,  &end

 &rst     iat = 730, 4442,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat =  731, 1300,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 4050, 1298,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 3449, 4047,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 3463, 4047,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 4095, 4444,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 4443, 4052,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 4102, 4445,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 4104, 4447,
           r1 = 0.700, r2 = 0.800, r3 = 2.400, r4 = 2.500 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat = 4446, 3355,
           r1 = 0.700, r2 = 0.800, r3 = 2.200, r4 = 2.300 ,
          rk2 = 25.0, rk3 = 25.0,  &end

 &rst     iat(1) = 0, &end
NON  backbone atoms of TMHs
FIND
* * S *
* * B *
* * 3 *
* * E *
N * M *
C * M *
SEARCH
RES 1 29 36 64 73 102 115 139 153 184 194 230 242 277
END
loops
RES 30 35 65 72 103 114 140 152 185 193 231 241
END
water1&2
RES 278 279
END 
lipids+water
RES 280 14687
END
END