AMBER Archive (2004)

Subject: Re: AMBER:

From: David A. Case (case_at_scripps.edu)
Date: Wed Dec 08 2004 - 13:49:41 CST

On Mon, Dec 06, 2004, Wanxin Sun wrote:
>
> I am a new user of Amber 8. I'd like to know whether amber can do steered
> molecular dynamics or interactive molecular dynamics. I'd like to model the
> mechanical unfolding process by AFM. If it can, could some one give me some
> guidance on it?
>

Amber has no direct user-level support for steered MD or interactive MD. You
might want to look at NAMD, (or consider writing the requisite code for
sander).

...good luck...dac

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