AMBER Archive (2004)

Subject: Re: AMBER: problem loading mdcrd to VMD

From: David E. Konerding (dekonerding_at_lbl.gov)
Date: Tue Nov 30 2004 - 09:45:59 CST

Ru-Zhen Li wrote:

> Dear all,
>
> I found that whenever I tried to load .mdcrd files to VMD to view the
> trajectory, it just shut down automatically, I tried different mdcrd
> files, the same happened, does anyone have this problem? any ideas of why?
>
> Thank you in advance!
>
> Best regards,
> Ruzhen

Hi Ru-Zhen,

Not sure about VMD, but UCSF Chimera (http://www.cgl.ucsf.edu/chimera)
supports AMBER trajectories
and both the old-style and new prmtop file formats (transparently-- it
detects for you).

Dave
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