AMBER Archive (2004)

Subject: Re: AMBER: build a cyclic peptide

From: Bill Ross (
Date: Tue Nov 23 2004 - 20:33:04 CST

> I wonder if there is a way to build a cyclic
> peptide in leap. "sequence" seems to give a linear one

Make a linear one and close the terminii. You can use xleap's
minimization function and clean up overlaps manually.

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