AMBER Archive (2004)

Subject: Re: AMBER: build a cyclic peptide

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Nov 23 2004 - 20:33:04 CST

> I wonder if there is a way to build a cyclic
> peptide in leap. "sequence" seems to give a linear one

Make a linear one and close the terminii. You can use xleap's
minimization function and clean up overlaps manually.

Bill
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu