AMBER Archive (2004)

Subject: Re: RE: AMBER: leap compiling problem on a 64-bit machine

From: xhu1_at_memphis.edu
Date: Fri Nov 19 2004 - 17:51:58 CST

Dear Ross,

Thank you for your reply. Our workstation is a dual 64bit
xeon-processor. Because we don't have MPICH installed, I just used
"Machine.g77". it works for another dual 32bit xeon-processor
workstation in our group(for sure, we can't run parallel jobs). The g77
compiler version in this 64bit workstation is 3.2.3-42 and kernel
version is 2.4.21-20.EL.

One thing I didn't mention in my last email is that I copied the whole
"amber7" directory from that 32bit workstation(memory is 2G)to this
64bit workstation(memory is 8G), and didn't do "clean" first before
"install". That maybe cause the error message "../Xraw/libXrawLeap.a:
could not read symbols: Memory exhausted" ??? You and Bill just reminded
me of this. Now I "cleaned" first, then "installed". Leap still gave me
an error message(but different) and stopped again.

*******************************************
/usr/bin/ld: cannot find -lXmu
collect2: ld returned 1 exit status
make[3]: *** [xaLeap] Error 1
make[3]: Leaving directory `/usr/local/amber7/src/leap/src/leap'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/usr/local/amber7/src/leap'
make[1]: *** [World] Error 2
make[1]: Leaving directory `/usr/local/amber7/src/leap'
make: *** [install] Error 2
****************************************************

The completed output files from the commands "xmkmf", "make World",
"make install.leap" were attached.

Thank you very much for your time. Very appreciate!

All the best

Shawn

----- Original Message -----
From: "Ross Walker" <ross_at_rosswalker.co.uk>
Date: Friday, November 19, 2004 1:32 pm
Subject: RE: AMBER: leap compiling problem on a 64-bit machine

> Dear Shawn,
>
>
> > I tried to compile amber7 on our new Xeon 64 bit machine. Leap
> gave a
> > problem:
> >
> > *******************************************************************
> > ../Xraw/libXrawLeap.a: could not read symbols: Memory exhausted
> > collect2: ld returned 1 exit status
> > make[3]: *** [xaLeap] Error 1
> > make[3]: Leaving directory `/usr/loca> make[2]: *** [all] Error 2
> > make[2]: Leaving directory `/usr/loca> make[1]: *** [World] Error 2
> > make[1]: Leaving directory `/usr/loca> make: *** [install] Error 2
> > ********************************************************************
>
> I have not come across this problem before. Can you send me some more
> information. The machine you used, compiler versions and the xleap
> buildmessages.
>
> Try this:
>
> cd $AMBERHOME/src/
> make clean
> cd leap
> xmkmf
> make World
> make install.leap
>
> Please send me all the output from the last 3 commands.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | Department of Molecular Biology TPC15 |
> | The Scripps Research Institute |
> | Tel:- +1 858 784 8889 | EMail:- ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk/ | PGP Key available on request |
>
>
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  • application/octet-stream attachment: xmkmf.out


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