AMBER Archive (2004)

Subject: AMBER: how to neutralize the peptide

From: Ye Mei (
Date: Tue Oct 26 2004 - 21:10:23 CDT

Dear Amber users£¬

Could anyone tell me how to neutrolize the peptide in leap.
By default, leap adds charges to terminals and some sidechains. But I need neutralized peptide and force field parameters for each atom.
Can anyone give any help?

Best regards,

Ye Mei
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