AMBER Archive (2004)

Subject: Re: AMBER: A question on AMBER8 installation

From: Hwankyu Lee (leehk_at_umich.edu)
Date: Tue Oct 19 2004 - 15:43:48 CDT

When I typed "make install" in /src/antechamber/, I got an error like below.

----------------
icc bondtype.o -lm -o bondtype
bondtype.o(.text+0x7648): In function `process_penalties(std::vector<Point, std:
:allocator<Point> >*, int)':
: undefined reference to `std::__default_alloc_template<true, 0>::deallocate(voi
d*, unsigned int)'

same kind of errors repeat............

bondtype.o(.gnu.linkonce.t._ZSt24__uninitialized_copy_auxIN9__gnu_cxx17__normal_
iteratorIP5PointSt6vectorIS2_SaIS2_EEEES7_ET0_T_S9_S8_12__false_type+0x7d): In f
unction `TAG_PACKET_28.0.156':
: undefined reference to `__cxa_end_catch'
bondtype.o(.gnu.linkonce.t._ZSt24__uninitialized_copy_auxIN9__gnu_cxx17__normal_
iteratorIP5PointSt6vectorIS2_SaIS2_EEEES7_ET0_T_S9_S8_12__false_type+0x91): In f
unction `destr_detour20.0.156':
: undefined reference to `__cxa_end_catch'
bondtype.o(.eh_frame+0x12): In function `.eh_frame_seg':
: undefined reference to `__gxx_personality_v0'
make: *** [bondtype] Error 1
-------------------

It looks like something wrong with execution of C compiler, but I can't figure
out how to solve this problem. When I did same thing in /src/leap/, it worked.
Now, when I type "make test" in test directory, everything passed except for
antechamber. How can I make antechamber in /exe/ ?
I'm using ifort version 8.0 (8.0.046), icc 8.1 (l_cc_p_8.1.021), mkl70,
glibc-2.3.3, Xorg-x11-6.7.0 in Fedora 2 at Pentium4.
Could you help me handle this problem?
Thanks for your help in advance.

best,
Hwankyu.

Quoting "David A. Case" <case_at_scripps.edu>:

> On Thu, Oct 14, 2004, Hwankyu Lee wrote:
>
> >
> > So, I also went to /src/antechamber and then type "make install" like I did
> > for leap. But, it didn't work for antechamber. How can I build up
> > antechamber file in /amber8/exe/.
>
> Come on! You have to say more than "it didn't work". How about posting the
> error messages, _after_ you have carefully studied them and tried for
> yourself
> to figure out what they mean, and if they suggest anything you might do to
> fix
> the problem?
>
> ...dac
>
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