AMBER Archive (2004)

Subject: RE: Re: AMBER: errors in SGI

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Thu Oct 14 2004 - 11:34:46 CDT


> mpirun -np 16 mm_pbsa.pl mm_pbsa.in >mm_pbsa.log < /dev/null
> the sander is paralleled,but the following nmode program is
> not paralleled.
> What's the problem?

Nmode is not a parallel program and so will only run on 1 cpu. Only sander
and pmemd are designed to run in parallel.

All the best
Ross

/\
\/
|\oss Walker

| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 | EMail:- ross_at_rosswalker.co.uk |
| http://www.rosswalker.co.uk/ | PGP Key available on request |
 

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu