AMBER Archive (2004)

Subject: AMBER: Re: rms fluct and displacement in modes analysis

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Tue Oct 12 2004 - 12:39:33 CDT

Dear David,
   Yes ..here you have an example:

matrix covar name covarmat @CA
analyze matrix covarmat out evecs.pev vecs 25
analyze modes displ[fluct] out displ-CA.dat file evecs.pev beg 1 end 6

I meant the rms fluct and the displacement calculated using the last
command.
Thanks
Best wishes
vlad 

-- 
Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204  

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