AMBER Archive (2004)

Subject: AMBER: Re: rms fluct and displacement in modes analysis

From: Vlad Cojocaru (
Date: Tue Oct 12 2004 - 12:39:33 CDT

Dear David,
   Yes you have an example:

matrix covar name covarmat @CA
analyze matrix covarmat out evecs.pev vecs 25
analyze modes displ[fluct] out displ-CA.dat file evecs.pev beg 1 end 6

I meant the rms fluct and the displacement calculated using the last
Best wishes

Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
home tel: ++49-551-9963204  

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