AMBER Archive (2004)

Subject: Re: AMBER: rms fluct and displacement in modes analysis

From: David A. Case (
Date: Tue Oct 12 2004 - 11:19:48 CDT

On Tue, Oct 12, 2004, Vlad Cojocaru wrote:

> Could somebody indicate me the way the rms fluct and displacements
> are calculated during mode analysis in ptraj?

I'm not sure what you mean by "mode analysis in ptraj". Can you give the
exact commands you are using?


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